mesoSPIM User Meeting 2022 poster

mesoSPIM User Meeting: Thursday, March 10th, 2022

The User Meeting will be held online via Zoom, except the mesoSPIM workflow demo (11:00-12:00) with limited attendance.

Registration

Registration deadline: March 1, 18:00 CET.

Program

Time Talk
9:00-9:15 Welcome by Fritjof Helmchen, UZH
  Clearing techniques
9:15-9:35 Alba Vieites Prado (Renier Lab, ICM) iDISCO+ tissue clearing and ClearMap for the analysis of axonal projections and brain vasculature.
9:40-10:10 Etsuo Susaki (Juntendo University) CUBIC for whole-organ/body cell circuit and tissue architecture analysis.
10:15-10:35 Shan Zhao (Bodenmiller Lab, UZH) The challenges of human tissue clearing, imaging and application.
10:40-11:00 Sven Hildebrand (Roebroeck Lab, Maastricht University) Investigating the human neocortex in 3D: Approaches for imaging angioarchitecture, cytoarchitecture, and intrinsic cortical connectivity.
11:00-12:00 Nikita Vladimirov (Helmchen Lab & ZMB, UZH) Demo of a mesoSPIM workflow (ZMB, room Y44-J-33)
12:00-13:00 Lunch break
  Developers: current status and outlook
13:00-13:15 Fabian Voigt (Engert Lab, Harvard) TBA
13:15-13:35 Nikita Vladimirov (Helmchen Lab & ZMB, UZH) Current developments and updates.
  Facility managers and power users: experiences and challenges
13:40-14:00 Laura Batti (Wyss Center) ALICe: Advanced Lightsheet Imaging Center.
14:00-14:20 José María Mateos (ZMB, UZH) Experiences running the MesoSPIM in a Core Facility
14:20-14:40 Anna-Maria Reuss (Aguzzi Lab, USZ) mesoSPIM imaging and handling of large human data sets
14:40-15:00 Thomas Naert (Lienkamp Lab, UZH) mesoSPIM and U-Net deep learning: three-dimensional modeling of embryonic development and disease
15:00-15:15 Break
  Image processing and visualization
15:15-15:35 Stephan Preibisch (HHMI Janelia) Towards reconstruction of peta-scale lightsheet microscopy datasets
15:35-15:55 Peter Majer (Oxford Instruments/Bitplane). Imaris and lightsheet data analysis. What works well
15:55-16:15 Benjamin Schmid (OICE), TBA
16:15-16:35 Johannes Paetzold (Ertürk Lab, TUM) Machine learning for vascular structures in microscopic data.
16:35-16:45 Break
16:45-17:30 Virtual round table: Current problems and future directions

Recording

The meeting will be recorded, and the talks will be posted on mesoSPIM YouTube channel. If you are speaker and would like to opt out from posting your talk on YouTube (entirely or partially), please notify the organizers by email before the conference. Thank you for cooperation!

In-person attendance

In-person attendance will be very limited due to COVID restrictions. If you would like to attend the mesoSPIM workflow demo (11:00-12:00) in person, please select ticket type On-site mesoSPIM demo during registration. If you are traveling from abroad, please additionally send a short confirmation email to us. Thank you for undestanding!

Registration

Registration deadline: March 1, 18:00 CET.